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  • Tang, Y.; Yuan, R.-S. & Ao, P., Anomalous Free Energy Changes Induced by Topology, Physical Review E2015accepted
  • Xu, M.-J.; Chen, Y.-C.; Ao, P. & Zhu, X.-M., Kinetic Model of Metabolic Network for Xiamenmycin Biosynthetic Optimisation, IET Systems Biology2015, online
  • Lei X.; Tian, W.; Chen, T. & Ao, P., Biological Sources of Intrinsic and Extrinsic Noise in cI Expression of Lysogenic Phage LambdaScientific Reports2015, 13597
  • Tang, Y.; Yuan, R.-S.; Chen, J.-H. & Ao, P., Work relations connecting nonequilibrium steady states without detailed balance, Physical Review E201591, 042108
  • Li, S.-T.; Zhu, X.-M.; Liu, B.-Y.; Wang, G.-W. & Ao, P., Endogenous Molecular Network Reveals Two Mechanisms of Heterogeneity within Gastric Cancer, Oncotarget, 2015, online
  • Zhu, X.-M.; Yuan, R.-S.; Hood, L. & Ao, P., Endogenous Molecular-Cellular Hierarchical Modeling of Prostate Carcinogenesis Uncovers Robust Structure, Progress in Biophysics and Molecular Biology2015, 117(1): 30-42


  • Tang, Y.; Yuan, R.-S.; Chen, J.-H. & Ao, P., Controlling Symmetry-Breaking States by a Hidden Quantity in Multiplicative Noise, Physical Review E201490, 052121
  • Tang, Y.; Yuan, R.-S. & Ao, P., Summing over Trajectories of Stochastic Dynamics with Multiplicative Noise, The Journal of Chemical Physics, 2014, 141 (4), 044125
  • Ao, P., Equivalent formulations of "the equation of life", Chinese Physics B. 2014, 23 (7): 070513
  • Tang, Y.; Yuan, R.-S. & Ao, P., Nonequilibrium Work Relation Beyond the Boltzmann-Gibbs Distribution, Physical Review E, 2014, 89, 062112
  • Wang, G.-W.; Zhu, X.-M.; Gu, J.-R. & Ao, P., Quantitative Implementation of Endogenous Molecular-Cellular Network Hypothesis in Hepatocellular carcinoma, Interface Focus, 2014, 4 (3), 20130064
  • Xu, S.; Jiao, S.-Y.; Jiang, P.-Y. & Ao, P., Two-time-scale Population Evolution on a Singular Landscape, Physical Review E, 2014, 89, 012724
  • Hu, J.; Zhu, X.-M.; Wang, X.-A.; Yuan, R.-S.; Zheng, W.; Xu, M.-J. & Ao, P., Two Programmed Replicative Lifespans of Saccharomyces cerevisiae Formed by Endogenous Molecular-Cellular Network, Journal of Theoretical Biology 2014, in press
  • Ma, Y.-A.; Tan, Q.-J.; Yuan, R.-S.; Yuan, B. & Ao, P., Potential Function in a Continuous Dissipative Chaotic System: Decomposition Scheme and Role of Strange Attractor, International Journal of Bifurcation and Chaos2014, 24 (2), 1450015
  • Yuan, R.-S.; Ma, Y.-A.; Yuan, B. & Ao, P., Lyapunov Function as Potential Function: A Dynamical Equivalence, Chinese Physics B. 2014, 23 (1): 010505


  • Yuan, R.-S.; Wang, X.-A.; Ma, Y.-A.; Yuan, B. & Ao, P., Exploring a Noisy van der Pol Type Oscillator with a Stochastic Approach, Physical Review E, 2013, 87 (6), 062109
  • Ao, P.; Chen, T.-Q. & Shi, J.-H., Dynamical Decomposition of Markov Processes without Detailed Balance, Chinese Physics Letters, 2013, 30 (7) ,070201
  • Tang, K.-C.; Ao, P. & Yuan, B., Robust Reconstruction of the Fokker-Planck Equations from Time Series at Different Sampling Rates, Europhysics Letters, 2013, 102 (4), 40003
  • Wang, G.-W.; Zhu, X.-M.; Hood, L. & Ao, P., From Phage Lambda to Human Cancer: Endogenous Molecular-Cellular Network Hypothesis, Quantitative Biology, 2013
  • Tang, Y.; Yuan, R.-S. & Ma, Y.-A., Dynamical Behaviors Determined by the Lyapunov Function in Competitive Lotka-Volterra Systems, Physical Review E , 2013, 87, 012708


  • Yuan, R.-S. & Ao, P., Beyond Itô versus Stratonovich, Journal of Statistical Mechanics: Theory and Experiment2012, P07010
  • Shi, J.-H.; Chen, T.-Q.; Yuan, R.-S.; Yuan, B. & Ao, P., Relation of a New Interpretation of Stochastic Differential Equations to Ito Process, Journal of Statistical Physics2012, 148 (3), 579-590
  • Friston, K. & Ao, P., Free-energy, Value and Attractors, Computational and Mathematical Methods in Medicine, 2012, 2012, 937860
  • Jiao, S.-Y. & Ao, P., Absorbing Phenomena and Escaping Time of Muller's Ratchet in Adaptive Landscape, BMC Systems Biology2012, 6 (Suppl 1), S10
  • Xu, M.-J.; Liu, X.-J.; Zhao, Y.-L.; Liu, D.; Xu, Z.-H.; Lang, X.-M.; Ao, P.; Lin, W.-H.; Yang, S.-L.; Zhang, Z.-G. & Xu, J., Identification and Characterization of an Anti-Fibrotic Benzopyran Compound Isolated from Mangrove-Derived Streptomyces xiamenensis, Marine Drugs, 2012, 10 (3), 639 - 654


  • Kwon, C. & Ao, P., Nonequilibrium Steady State of a Stochastic System Driven by a Nonlinear Drift Force, Physical Review E, 2011, 84, 061106
  • Xu, W.; Yuan, B. & Ao, P., Construction of Lyapunov Function for Dissipative Gyroscopic System, Chinese Physics Letters2011, 28, 050201
  • Xu, M.-J.; Zhu, X.-M.; Lin, B.-H. & Ao, P., Generic Enzymatic Rate Equation, Progress in Biochemistry and Biophysics, 2011, 38 (8), 759 - 767
  • Xu, J.; Liu, L.-P.; Xu, M.-J.; Philippe, O.; Wang, F.-P.; Mohamed, J. & Xiao, X., Complete Genome Sequence of the Obligate Piezophilic hyperthermophilic Archaeon Pyrococcus yayanosii CH1. Journal of Bacteriology, 2011, 193 (16), 4297 - 4298
  • Lai, D.-W.; Li, Y.-X.; Xu, M.-J.; Deng, Z.-W., Ofwegen, L. v.; Qian, P.-Y.; Proksch, P. & Lin W.-H., Sinulariols A-S, 19-oxygenated Cembranoids from the Chinese Soft Coral Sinularia rigida, Tetrahedron, 2011, 67 (33), 6018 - 6029


  • Ao, P.; Galas, D.; Hood, L.; Yin, L. & Zhu, X. M., Towards Predictive Stochastic Dynamical Modeling of Cancer Genesis and Progression, Interdisciplinary Sciences: Computational Life Sciences, 2010, 2, 140-144
  • Sun, T.-Z.; Yuan, R.-S.; Xu, W.; Zhu, F. & Shen, P.-P., Exploring a Minimal Two-component p53 Model, Physical Biology, 2010, 7 (3), 036008
  • Wang, F.-F.; Xu, M.-J.; Li, Q.-S.; Sattler, I. & Lin, W.-H., p-Aminoacetophenonic Acids Produced by a Mangrove Endophyte Streptomyces sp. (strain HK10552), Molecules, 2010, 15 (4), 2782 - 2790
  • Li, X.-L.; Xu, M.-J.; Zhao, Y.-L. & Xu, J., A Novel Benzo[f][1,7]Naphthyridine Produced by Streptomyces Albogriseolus from Mangrove Sediments, Molecules, 2010, 15 (12), 9298 - 9307
  • Xu, M.-J.; Bruhn, T.; Hertlein, B.; Brun, R.; Stich, A; Wu, J. & Bringmann, G., Shuangancistrotectorines A-E, Dimeric Naphthylisoquinoline Alkaloids with Three Chiral Biaryl Axes from the Chinese Plant Ancistrocladus tectorius, Chemistry - A European Journal, 2010, 16 (14), 4206 - 4216
  • Wei, Y.-Y.; Xu, M.-J.; Lin, W.-H.; Qiu, Y.; Zhang X.-K. & Zeng, J.-Z., Exfoliazone Inhibitsthe Growth of HepG2 Cells by Inducing Apoptosis, Journal of Xiamen University (Natural Science), 2010, 49 (3), 423 - 427



  • Ao, P.; Lee, L. W.; Lidstrom, M. E.; Yin, L. & Zhu, X., Towards Kinetic Modeling of Global Metabolic Networks with Incomplete Experimental Input on Kinetic Parameters, Chinese Journal of Biotechnology, 2008, 24, 980-994
  • Ao, P.; Galas, D.; Hood, L. & Zhu, X., Cancer as Robust Intrinsic State of Endogenous Molecular-Cellular Network Shaped by Evolution, Medical Hypotheses2008, 70, 678-684
  • Ao, P., Emerging of Stochastic Dynamical Equalities and Steady State Thermodynamics from Darwinian Dynamics, Communications in Theoretical Physics, 2008, 49, 1073
  • Ao, P., Borges Dilemma, Fundamental Laws, and Systems Biology, Bioinformatics and Biology Insights, 2008, 2, 201 - 202
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